生物信息学
生物信息學
생물신식학
BIOINFORMATICS
2011年
1期
82-87,92
,共7页
王翊%胡宗利%杨妤欣%陈绪清%陈国平
王翊%鬍宗利%楊妤訢%陳緒清%陳國平
왕익%호종리%양여흔%진서청%진국평
SBP-box%水稻%基因芯片%表达谱
SBP-box%水稻%基因芯片%錶達譜
SBP-box%수도%기인심편%표체보
SBP-box%rice%microarray%expression profiling
SQUAMOSA PROMOTER BINDING PROTEIN–LIKE (SBP) 转录因子家族是植物特有的一类转录因子.本文确定了20水稻基因组上编码的SBP基因.通过分类,染色体定位,保守区确定,亲缘关系,以及水稻SBP家族中的重复基因及该家族成员形成蛋白二聚体的可能性进行分析,其次利用了Affymetrix水稻基因组芯片数据,对所有这些基因的表达谱进行了分析.结果表明,水稻SBP基因在花和种子的发育过程中可能发挥重要作用,而其对环境胁迫却不敏感.这对进一步研究SBP的功能提供了有价值的线索和思路.
SQUAMOSA PROMOTER BINDING PROTEIN–LIKE (SBP) 轉錄因子傢族是植物特有的一類轉錄因子.本文確定瞭20水稻基因組上編碼的SBP基因.通過分類,染色體定位,保守區確定,親緣關繫,以及水稻SBP傢族中的重複基因及該傢族成員形成蛋白二聚體的可能性進行分析,其次利用瞭Affymetrix水稻基因組芯片數據,對所有這些基因的錶達譜進行瞭分析.結果錶明,水稻SBP基因在花和種子的髮育過程中可能髮揮重要作用,而其對環境脅迫卻不敏感.這對進一步研究SBP的功能提供瞭有價值的線索和思路.
SQUAMOSA PROMOTER BINDING PROTEIN–LIKE (SBP) 전록인자가족시식물특유적일류전록인자.본문학정료20수도기인조상편마적SBP기인.통과분류,염색체정위,보수구학정,친연관계,이급수도SBP가족중적중복기인급해가족성원형성단백이취체적가능성진행분석,기차이용료Affymetrix수도기인조심편수거,대소유저사기인적표체보진행료분석.결과표명,수도SBP기인재화화충자적발육과정중가능발휘중요작용,이기대배경협박각불민감.저대진일보연구SBP적공능제공료유개치적선색화사로.
The SQUAMOSA PROMOTER BINDING PROTEIN–LIKE (SBP) proteins compose a family of transcriptional regulators present exclusively in plants. In this study, we identified 20 SBP-box transcription factor-encoding genes in the rice (Oryza sativa) genome. An analysis of a complete set of SBP-box proteins in rice is presented, including classification, chromosomal location, conserved motifs, and phylogenetic relationship. Relative expression of all these genes has been analyzed by using Affymetrix rice genome array?. The results reveal specific expression of SBP-box protein encoding-genes during floral transition as well as panicle and seed development. No SBP-box transcription factor-encoding genes in rice displayed differential expression patterns in rice seedlings in response to abiotic stress. This information will be important for functional characterization of SBP transcription factors in rice.