华南农业大学学报
華南農業大學學報
화남농업대학학보
JOURNAL OF SOUTH CHINA AGRICULTURAL UNIVERSITY
2010年
2期
113-116
,共4页
刘中勇%吴晓薇%林志雄%张停婷
劉中勇%吳曉薇%林誌雄%張停婷
류중용%오효미%림지웅%장정정
BMCMC法%H1N1流感病毒%进化关系
BMCMC法%H1N1流感病毒%進化關繫
BMCMC법%H1N1류감병독%진화관계
BMCMC method%H1N1 influenza virus%phylogenetic relationship
从GenBank上下载所有1978-2009年在中国分离的H1N1亚型流感病毒的HA和NA基因及所有同期在中国分离的A型流感病毒(宿主包括人、猪和禽)的PB1、PB2、PA、NS、NP和M基因的序列,将这些基因序列与2009年在中国发生的墨西哥H1N1流感病毒的对应基因序列进行BMCMC法分析,绘制BMCMC进化树,结果揭示中国发生的墨西哥H1N1流感病毒的HA和NA基因相对独立于中国季节性H1N1流感病毒;M基因相对独立于中国国内的季节性流感病毒和禽源流感病毒;PB1基因包含在季节性流感病毒的分群内;PB2基因和NS基因与国内重排的流感病毒相关,但相对独立于国内的季节性流感病毒和禽源流感病毒;PA基因包含在国内禽流感病毒的分群内;NP基因则与国内传统的猪流感病毒相关,但相对独立于国内的季节性流感病毒和禽源流感病毒.
從GenBank上下載所有1978-2009年在中國分離的H1N1亞型流感病毒的HA和NA基因及所有同期在中國分離的A型流感病毒(宿主包括人、豬和禽)的PB1、PB2、PA、NS、NP和M基因的序列,將這些基因序列與2009年在中國髮生的墨西哥H1N1流感病毒的對應基因序列進行BMCMC法分析,繪製BMCMC進化樹,結果揭示中國髮生的墨西哥H1N1流感病毒的HA和NA基因相對獨立于中國季節性H1N1流感病毒;M基因相對獨立于中國國內的季節性流感病毒和禽源流感病毒;PB1基因包含在季節性流感病毒的分群內;PB2基因和NS基因與國內重排的流感病毒相關,但相對獨立于國內的季節性流感病毒和禽源流感病毒;PA基因包含在國內禽流感病毒的分群內;NP基因則與國內傳統的豬流感病毒相關,但相對獨立于國內的季節性流感病毒和禽源流感病毒.
종GenBank상하재소유1978-2009년재중국분리적H1N1아형류감병독적HA화NA기인급소유동기재중국분리적A형류감병독(숙주포괄인、저화금)적PB1、PB2、PA、NS、NP화M기인적서렬,장저사기인서렬여2009년재중국발생적묵서가H1N1류감병독적대응기인서렬진행BMCMC법분석,회제BMCMC진화수,결과게시중국발생적묵서가H1N1류감병독적HA화NA기인상대독립우중국계절성H1N1류감병독;M기인상대독립우중국국내적계절성류감병독화금원류감병독;PB1기인포함재계절성류감병독적분군내;PB2기인화NS기인여국내중배적류감병독상관,단상대독립우국내적계절성류감병독화금원류감병독;PA기인포함재국내금류감병독적분군내;NP기인칙여국내전통적저류감병독상관,단상대독립우국내적계절성류감병독화금원류감병독.
The HA and NA gene sequences of Chinese H1N1 subtype viruses and the sequences of all the rest genes of the Chinese A influenza viruses from different hosts (including human,pig and poultry) collected during 1978-2009 were downloaded from GenBank.All these sequences were aligned against the sequences of 2009 H1N1 viruses in China,and the phylogenetic trees were reconstructed by BMCMC.The result showed that HA and NA genes of 2009 H1N1 viruses in China were relatively different from Chinese seasonal H1N1 subtype viruses.M gene of H1N1 viruses were relatively different from Chinese seasonal flu viruses and avian flu,PB1 gene of 2009 H1N1 viruses were included in the cluster of Chinese seasonal flu viruses,PB2 gene and NS gene of 2009 H1N1 viruses were probably associated with Chinese reassortant flu viruses but relatively different from Chinese seasonal flu viruses and avian flu viruses,PA gene of 2009 H1N1 viruses were included in the cluster of Chinese avian flu viruses,NP gene of 2009 H1N1 viruses were probably associated with Chinese classical swine flu viruses but relatively different from Chinese seasonal flu viruses and avian flu viruses.