水产学杂志
水產學雜誌
수산학잡지
CHINESE JOURNAL OF FISHERIES
2011年
4期
50-53
,共4页
耿波%关云涛%孙效文%匡友谊
耿波%關雲濤%孫效文%劻友誼
경파%관운도%손효문%광우의
鲤%同源框基因%序列同源性%分子进化%SNP
鯉%同源框基因%序列同源性%分子進化%SNP
리%동원광기인%서렬동원성%분자진화%SNP
common carp%homeobox gene(Hox gene)%sequence homology%molecular evolution%SNP
本文利用生物信息学软件分析了鲤(Cyprinus carpio)基因组中同源框基因Hoxa3a与多种鱼类及其它生物的同源性,构建了分子进化树。结果表明:鲤与斑马鱼(Danio rerio)的序列同源性最高为95%,与大西洋鲑(Salmo salar)等四种鱼类的同源性次之为84%,与米氏叶吻银鲛(Callorhinchus milii)和鳐(Leucoraja erinacea)的同源性最低为74.5%,与三种鸟类的同源性为75%左右。这结果也说明,Hox同源框基因序列在进化上高度保守。在序列比较的同时发现了2个鲤的SNP位点,T101C和A213G。上述研究结果,对于保护生物多样性(尤其是遗传多样性)的研究,揭示生物进化历程及机理具有十分重要的意义。
本文利用生物信息學軟件分析瞭鯉(Cyprinus carpio)基因組中同源框基因Hoxa3a與多種魚類及其它生物的同源性,構建瞭分子進化樹。結果錶明:鯉與斑馬魚(Danio rerio)的序列同源性最高為95%,與大西洋鮭(Salmo salar)等四種魚類的同源性次之為84%,與米氏葉吻銀鮫(Callorhinchus milii)和鰩(Leucoraja erinacea)的同源性最低為74.5%,與三種鳥類的同源性為75%左右。這結果也說明,Hox同源框基因序列在進化上高度保守。在序列比較的同時髮現瞭2箇鯉的SNP位點,T101C和A213G。上述研究結果,對于保護生物多樣性(尤其是遺傳多樣性)的研究,揭示生物進化歷程及機理具有十分重要的意義。
본문이용생물신식학연건분석료리(Cyprinus carpio)기인조중동원광기인Hoxa3a여다충어류급기타생물적동원성,구건료분자진화수。결과표명:리여반마어(Danio rerio)적서렬동원성최고위95%,여대서양해(Salmo salar)등사충어류적동원성차지위84%,여미씨협문은교(Callorhinchus milii)화요(Leucoraja erinacea)적동원성최저위74.5%,여삼충조류적동원성위75%좌우。저결과야설명,Hox동원광기인서렬재진화상고도보수。재서렬비교적동시발현료2개리적SNP위점,T101C화A213G。상술연구결과,대우보호생물다양성(우기시유전다양성)적연구,게시생물진화역정급궤리구유십분중요적의의。
The sequence homology and molecular evolution of Hoxa3a gene were analyzed in common carp and other fishes and organisms by some bioinformatics softs.The results showed that the maximal sequence homology(up to 95%) was observed in common carp(Cyprinus carpio) and zebrafish(Danio rerio),followed by Atlantic salmon(Salmo salar),Japanese pufferfish(Takifugu rubripes),Japanese medaka(Oryzias latipes) and Cichlid fish(Astatotilapia burtoni)(about 84%),and the minimal(74.5%) in other fishes such as lttle skate(Leucoraja erinacea) and Australian ghost shark(Callorhinchus milii).The sequence homology of common carp with three non-fish organisms was found to be 75%.This result also showed that Hox gene sequences were highly conserved evolutionarily.In the sequence comparison at the same time,two common carp SNP sites 101 site(T/C) and 213 site(C/T) were found.The result has great significance for the conservation of biological diversity(particularly genetic diversity) study and reveals the progress and mechanism of biological evolution.