农业科学与技术:英文版
農業科學與技術:英文版
농업과학여기술:영문판
Agricultural Science & Technology
2011年
12期
1802-1806,1860
,共6页
马玉韬%张成%杨泽林%李琦%杨婷
馬玉韜%張成%楊澤林%李琦%楊婷
마옥도%장성%양택림%리기%양정
预测准确率%蛋白质编码区%映射方法%加窗%窄通带滤波器
預測準確率%蛋白質編碼區%映射方法%加窗%窄通帶濾波器
예측준학솔%단백질편마구%영사방법%가창%착통대려파기
Prediction accuracy%Protein coding regions%Mapping method%Windowed%Narrow pass-band filter
[目的]探讨当前主要的DNA序列映射方法对蛋白质编码区的预测准确率的影响,寻找有效的映射方法。[方法]以AC(Approximate Correlation)为碱基层的预测准确率的测度,采用FIR(Finite Impulse Response)窄通带滤波器预测算法研究各种映射方法对预测准确率的影响。[结果]在ALLSEQ和HMR195 2个DNA序列集上,Voss法和Z-curve方法是较PN(Paired Numeric)法、EIIP(Electron-Io Interaction Potential)法和复数法更为有效的映射方法。[结论]该研究结果为用预测结果的AC值来验证新映射方法的有效性奠定了基础,对利用生物信息学方法正确揭示DNA序列的结构具有重要意义。
[目的]探討噹前主要的DNA序列映射方法對蛋白質編碼區的預測準確率的影響,尋找有效的映射方法。[方法]以AC(Approximate Correlation)為堿基層的預測準確率的測度,採用FIR(Finite Impulse Response)窄通帶濾波器預測算法研究各種映射方法對預測準確率的影響。[結果]在ALLSEQ和HMR195 2箇DNA序列集上,Voss法和Z-curve方法是較PN(Paired Numeric)法、EIIP(Electron-Io Interaction Potential)法和複數法更為有效的映射方法。[結論]該研究結果為用預測結果的AC值來驗證新映射方法的有效性奠定瞭基礎,對利用生物信息學方法正確揭示DNA序列的結構具有重要意義。
[목적]탐토당전주요적DNA서렬영사방법대단백질편마구적예측준학솔적영향,심조유효적영사방법。[방법]이AC(Approximate Correlation)위감기층적예측준학솔적측도,채용FIR(Finite Impulse Response)착통대려파기예측산법연구각충영사방법대예측준학솔적영향。[결과]재ALLSEQ화HMR195 2개DNA서렬집상,Voss법화Z-curve방법시교PN(Paired Numeric)법、EIIP(Electron-Io Interaction Potential)법화복수법경위유효적영사방법。[결론]해연구결과위용예측결과적AC치래험증신영사방법적유효성전정료기출,대이용생물신식학방법정학게시DNA서렬적결구구유중요의의。
[Objective] To discuss the effects of major mapping methods for DNA sequence on the accuracy of protein coding regions prediction,and to find out the effective mapping methods.[Method] By taking Approximate Correlation(AC) as the full measure of the prediction accuracy at nucleotide level,the windowed narrow pass-band filter(WNPBF) based prediction algorithm was applied to study the effects of different mapping methods on prediction accuracy.[Result] In DNA data sets ALLSEQ and HMR195,the Voss and Z-Curve methods are proved to be more effective mapping methods than paired numeric(PN),Electron-ion Interaction Potential(EIIP) and complex number methods.[Conclusion] This study lays the foundation to verify the effectiveness of new mapping methods by using the predicted AC value,and it is meaningful to reveal DNA structure by using bioinformatics methods.