华北农学报
華北農學報
화북농학보
ACTA AGRICULTURAE BOREALI-SINICA
2014年
2期
121-126
,共6页
葡萄%EST-SSR%聚类分析
葡萄%EST-SSR%聚類分析
포도%EST-SSR%취류분석
Grape%EST-SSR%Cluster analysis
借助SSRs软件查找葡萄属含有SSR的EST序列,从葡萄属EST-SSR数据库中开发新型的EST-SSR标记,进行可利用性筛选,并设计引物。共开发出28对引物,从中筛选到16对多态性引物对62份葡萄材料进行PCR扩增。计算相似系数并构建聚类树状图,通过聚类分析研究葡萄属不同品种之间的亲缘关系,进一步验证EST-SSR在葡萄种质分类鉴定中的可行性。结果表明:绝大多数材料间的相似系数大于0.74,62份供试材料在相似系数0.658处可分为4个类群,大多数亲缘关系较近的种质资源都聚集在一起,相似系数种内较种间大,与传统分类情况基本一致。
藉助SSRs軟件查找葡萄屬含有SSR的EST序列,從葡萄屬EST-SSR數據庫中開髮新型的EST-SSR標記,進行可利用性篩選,併設計引物。共開髮齣28對引物,從中篩選到16對多態性引物對62份葡萄材料進行PCR擴增。計算相似繫數併構建聚類樹狀圖,通過聚類分析研究葡萄屬不同品種之間的親緣關繫,進一步驗證EST-SSR在葡萄種質分類鑒定中的可行性。結果錶明:絕大多數材料間的相似繫數大于0.74,62份供試材料在相似繫數0.658處可分為4箇類群,大多數親緣關繫較近的種質資源都聚集在一起,相似繫數種內較種間大,與傳統分類情況基本一緻。
차조SSRs연건사조포도속함유SSR적EST서렬,종포도속EST-SSR수거고중개발신형적EST-SSR표기,진행가이용성사선,병설계인물。공개발출28대인물,종중사선도16대다태성인물대62빈포도재료진행PCR확증。계산상사계수병구건취류수상도,통과취류분석연구포도속불동품충지간적친연관계,진일보험증EST-SSR재포도충질분류감정중적가행성。결과표명:절대다수재료간적상사계수대우0.74,62빈공시재료재상사계수0.658처가분위4개류군,대다수친연관계교근적충질자원도취집재일기,상사계수충내교충간대,여전통분류정황기본일치。
To develop the new EST-SSR marks from the EST-SSR database of grape germplasm, the statistic software of SSRs were utilized to search the sequences of EST containing SSRs,then the available were selected and the corresponding primers were designed and filtered. All the obtained 16 pairs of pleomorphic primers were used to carry out PCR amplification for 62 grape materials. Using UPGMA method to construct dendrogram based on the similarity coefficient calculated by the software of NTSYS. To invstigate the genetic relationships of grape germplasm resources and farther validate the feasibility of EST-SSR on classifying grape germplasm resources,the clustered re-sult was analyzed. The result indicated that the similarity coefficient of majority germplasm was more than 0. 74,and 62 grape materials were classified into 4 groups at 0 . 658 . Most grape germplasm resources having close kinship were clustered together,and the similarity coefficient of intraspecies was bigger than interspecies. The result was consist-ent with that acquired from traditional taxonomy.