世界科学技术-中医药现代化
世界科學技術-中醫藥現代化
세계과학기술-중의약현대화
WORLD SCIENCE AND TECHNOLOGY-MODERNIZATION OF TRADITIONAL CHINESE MEDICINE
2013年
3期
421-428
,共8页
赵莎%辛天怡%侯典云%庞晓慧%程睿旸%高建平
趙莎%辛天怡%侯典雲%龐曉慧%程睿旸%高建平
조사%신천이%후전운%방효혜%정예양%고건평
党参%ITS/ITS2%分子鉴定%DNA条形码
黨參%ITS/ITS2%分子鑒定%DNA條形碼
당삼%ITS/ITS2%분자감정%DNA조형마
Codonopsis Radix%ITS/ITS2%Molecular Identification%DNA barcoding
为简便有效地鉴定党参药材及其混伪品并验证ITS/ITS2序列作为DNA条形码鉴定药材的稳定性和准确性,本研究选用党参药材及其混伪品作为研究对象,对33份药材样本提取基因组DNA,通过PCR扩增ITS序列,采用比对法、最小距离法对序列鉴定能力进行评估。通过序列比对,分析变异位点信息确定不同的单倍型并计算种内和种间K2P距离。ITS2序列采用基于隐马尔可夫模型的HMMer(Hidden Markov Model)注释方法获得。结果表明,党参药材3个基原物种ITS序列长度为654-655 bp,ITS2序列长度均为239 bp,ITS/ITS2序列种内平均K2P遗传距离均远小于其与混伪品的种间平均K2P遗传距离,因此ITS/ITS2序列作为DNA条形码能稳定、准确鉴别党参药材及其混伪品,为其鉴定提供新的技术手段。
為簡便有效地鑒定黨參藥材及其混偽品併驗證ITS/ITS2序列作為DNA條形碼鑒定藥材的穩定性和準確性,本研究選用黨參藥材及其混偽品作為研究對象,對33份藥材樣本提取基因組DNA,通過PCR擴增ITS序列,採用比對法、最小距離法對序列鑒定能力進行評估。通過序列比對,分析變異位點信息確定不同的單倍型併計算種內和種間K2P距離。ITS2序列採用基于隱馬爾可伕模型的HMMer(Hidden Markov Model)註釋方法穫得。結果錶明,黨參藥材3箇基原物種ITS序列長度為654-655 bp,ITS2序列長度均為239 bp,ITS/ITS2序列種內平均K2P遺傳距離均遠小于其與混偽品的種間平均K2P遺傳距離,因此ITS/ITS2序列作為DNA條形碼能穩定、準確鑒彆黨參藥材及其混偽品,為其鑒定提供新的技術手段。
위간편유효지감정당삼약재급기혼위품병험증ITS/ITS2서렬작위DNA조형마감정약재적은정성화준학성,본연구선용당삼약재급기혼위품작위연구대상,대33빈약재양본제취기인조DNA,통과PCR확증ITS서렬,채용비대법、최소거리법대서렬감정능력진행평고。통과서렬비대,분석변이위점신식학정불동적단배형병계산충내화충간K2P거리。ITS2서렬채용기우은마이가부모형적HMMer(Hidden Markov Model)주석방법획득。결과표명,당삼약재3개기원물충ITS서렬장도위654-655 bp,ITS2서렬장도균위239 bp,ITS/ITS2서렬충내평균K2P유전거리균원소우기여혼위품적충간평균K2P유전거리,인차ITS/ITS2서렬작위DNA조형마능은정、준학감별당삼약재급기혼위품,위기감정제공신적기술수단。
The ITS/ITS2 barcodes were used to simply and effectively identify Codonopsis Radix and its adulter-ants. In this study, ITS (internal transcribed spacer of unclear ribosomal DNA) regions were amplified using PCR (polymerase chain reaction) from thirty-three samples of Codonopsis Radix and ITS2 regions were obtained from the ITS sequences using the hidden Markov model (HMMer)-based annotation methods. The sequences of ITS/ITS2 regions were aligned and the genetic distances were computed by MEGA5.0. Species identification efficiency of ITS/ITS2 sequences were evaluated using BLAST1 and nearest distance methods. The results indicated that The sequences lengths of ITS regions of Codonopsis Radix were 654-655 bp, and the lengths of ITS2 regions were 239 bp. The intraspecific genetic distances among Codonopsis Radix were obviously lower than the interspecific genetic distance between Codonopsis Radix and its adulterants. Therefore, ITS/ITS2 regions can stably and accu-rately distinguish Codonopsis Radix and its adulterants.