中国血吸虫病防治杂志
中國血吸蟲病防治雜誌
중국혈흡충병방치잡지
CHINESE JOURNAL OF SCHISTOSOMIASIS CONTROL
2014年
2期
175-179
,共5页
吕山%张仪%郭云海%刘和香%周正斌%蒋明%顾文彪
呂山%張儀%郭雲海%劉和香%週正斌%蔣明%顧文彪
려산%장의%곽운해%류화향%주정빈%장명%고문표
广州管圆线虫%线粒体基因组%比较分析
廣州管圓線蟲%線粒體基因組%比較分析
엄주관원선충%선립체기인조%비교분석
Angiostrongylus cantonensis%Mitochondrial genome%Comparative analysis
目的:比较我国大陆地区广州管圆线虫线粒体基因组的多态性。方法在种群遗传学研究基础上,选取7条雌虫进行线粒体基因组的测定。根据广州管圆线虫线粒体基因组已知序列(GQ398121)设计12对引物,进行PCR扩增,并对目的片段进行测序和拼接。利用多种生物学软件对测定的线粒体基因组进行基因定位、结构图绘制、核苷酸及变异位点分析、进化关系分析。结果获得5个不同遗传类型的线粒体基因组。这些基因组的大小相似、结构相同,即13491~13502对碱基,含12个蛋白编码基因,2个核糖体基因,22个tRNA基因,2个较大的非编码区。上述基因紧密地排列在同一条DNA链上,并具有相同的转录方向。通过对这些基因组的比对发现,变异位点745个,占整个基因组的5.5%。其中,缺失/插入突变59个,碱基颠换105个,碱基转换581个。这些突变位点均匀地分布在整个线粒体基因组中。结论本研究提供了丰富的广州管圆线虫线粒体基因的突变位点,为构建种内鉴别诊断技术提供了基础。
目的:比較我國大陸地區廣州管圓線蟲線粒體基因組的多態性。方法在種群遺傳學研究基礎上,選取7條雌蟲進行線粒體基因組的測定。根據廣州管圓線蟲線粒體基因組已知序列(GQ398121)設計12對引物,進行PCR擴增,併對目的片段進行測序和拼接。利用多種生物學軟件對測定的線粒體基因組進行基因定位、結構圖繪製、覈苷痠及變異位點分析、進化關繫分析。結果穫得5箇不同遺傳類型的線粒體基因組。這些基因組的大小相似、結構相同,即13491~13502對堿基,含12箇蛋白編碼基因,2箇覈糖體基因,22箇tRNA基因,2箇較大的非編碼區。上述基因緊密地排列在同一條DNA鏈上,併具有相同的轉錄方嚮。通過對這些基因組的比對髮現,變異位點745箇,佔整箇基因組的5.5%。其中,缺失/插入突變59箇,堿基顛換105箇,堿基轉換581箇。這些突變位點均勻地分佈在整箇線粒體基因組中。結論本研究提供瞭豐富的廣州管圓線蟲線粒體基因的突變位點,為構建種內鑒彆診斷技術提供瞭基礎。
목적:비교아국대륙지구엄주관원선충선립체기인조적다태성。방법재충군유전학연구기출상,선취7조자충진행선립체기인조적측정。근거엄주관원선충선립체기인조이지서렬(GQ398121)설계12대인물,진행PCR확증,병대목적편단진행측서화병접。이용다충생물학연건대측정적선립체기인조진행기인정위、결구도회제、핵감산급변이위점분석、진화관계분석。결과획득5개불동유전류형적선립체기인조。저사기인조적대소상사、결구상동,즉13491~13502대감기,함12개단백편마기인,2개핵당체기인,22개tRNA기인,2개교대적비편마구。상술기인긴밀지배렬재동일조DNA련상,병구유상동적전록방향。통과대저사기인조적비대발현,변이위점745개,점정개기인조적5.5%。기중,결실/삽입돌변59개,감기전환105개,감기전환581개。저사돌변위점균균지분포재정개선립체기인조중。결론본연구제공료봉부적엄주관원선충선립체기인적돌변위점,위구건충내감별진단기술제공료기출。
Objective To compare the diversity of mitochondrial genomes of Angiostrongylus cantonensis in the mainland of China. Methods According to the population genetic of A. cantonensis,seven female worms were selected to characterize the mi-tochondrial(MT)genomes. Twelve primer pairs based on known MT genome(GQ398121)were used for PCR. The target frag-ments were sequenced and aligned. The gene localization,genome structure,composition of nucleotide,distribution of variable sites,and phylogeny were analyzed by employing multiple softwares. Results Five distinct types were identified from seven com-plete MT genomes. They were similar in size and structure,i.e.,ranging 13 491-13 502 bp,including 12 protein-coding genes,2 ribosomal genes,22 tRNA genes,and 2 major non-coding regions. All the genes were localized at the same strand and had the same transcription direction. A total of 745 variable sites were identified,accounting for 5.5%. Among the variable sites,59 were deletion/insert mutations,105 transversions,and 581 transitions. The variable sites distributed evenly at the complete genome. Conclusion The study reveals the mutation profile in the whole MT genome of A. cantonensis and thus will facilitate the develop-ment of intraspecific differential diagnosis.