中国麻业科学
中國痳業科學
중국마업과학
PLANT FIBER SCIENCES IN CHINA
2013年
3期
118-121,154
,共5页
陈平%喻春明%王延周%陈继康%熊和平
陳平%喻春明%王延週%陳繼康%熊和平
진평%유춘명%왕연주%진계강%웅화평
纤维素合成酶%苎麻%大麻%生物信息学分析
纖維素閤成酶%苧痳%大痳%生物信息學分析
섬유소합성매%저마%대마%생물신식학분석
cellulose synthase%ramie%hemp%bioinformatics analysis
本文利用生物信息学方法从转录组测序数据库中分离了苎麻纤维素合成酶CesA1(BnCesA1)基因全长编码区序列( NCBI 登录号: KC112993),并与大麻纤维素合成酶(CsCesA1)进行了氨基酸组成成分、理化性质以及二级结构比较,构建了CesA1基因家族的进化树。结果显示BnCesA1由3249个碱基组成,编码1082个氨基酸组成的蛋白, CsCesA1由3198个碱基组成,编码1065个氨基酸组成的蛋白。它们是疏水性脂溶蛋白,都含有6个跨膜区,二级结构以α-螺旋和无规卷曲为主,存在小部分β-转角或扩展链。两基因的核酸序列同源性为86%,氨基酸序列同源性为93%。本文结果为麻类作物纤维素合成酶基因的进一步功能分析提供了基础。
本文利用生物信息學方法從轉錄組測序數據庫中分離瞭苧痳纖維素閤成酶CesA1(BnCesA1)基因全長編碼區序列( NCBI 登錄號: KC112993),併與大痳纖維素閤成酶(CsCesA1)進行瞭氨基痠組成成分、理化性質以及二級結構比較,構建瞭CesA1基因傢族的進化樹。結果顯示BnCesA1由3249箇堿基組成,編碼1082箇氨基痠組成的蛋白, CsCesA1由3198箇堿基組成,編碼1065箇氨基痠組成的蛋白。它們是疏水性脂溶蛋白,都含有6箇跨膜區,二級結構以α-螺鏇和無規捲麯為主,存在小部分β-轉角或擴展鏈。兩基因的覈痠序列同源性為86%,氨基痠序列同源性為93%。本文結果為痳類作物纖維素閤成酶基因的進一步功能分析提供瞭基礎。
본문이용생물신식학방법종전록조측서수거고중분리료저마섬유소합성매CesA1(BnCesA1)기인전장편마구서렬( NCBI 등록호: KC112993),병여대마섬유소합성매(CsCesA1)진행료안기산조성성분、이화성질이급이급결구비교,구건료CesA1기인가족적진화수。결과현시BnCesA1유3249개감기조성,편마1082개안기산조성적단백, CsCesA1유3198개감기조성,편마1065개안기산조성적단백。타문시소수성지용단백,도함유6개과막구,이급결구이α-라선화무규권곡위주,존재소부분β-전각혹확전련。량기인적핵산서렬동원성위86%,안기산서렬동원성위93%。본문결과위마류작물섬유소합성매기인적진일보공능분석제공료기출。
The full length of BnCesA1 cDNA coding region was isolated from transcriptome sequen-cing data by bioinformatics method , and logined in GeneBank ( accession number:KC112993 ) .Sever-al parameters of BnCesA1 and CsCesA1 including sequences composition , physicochemical property , to-pological structure of transmembrane regions , hydrophobicity or hydrophilicity , secondary structures were predicted.The results showed that BnCesA1 ORF was 3249 bp in length , encoded a protein of 1082 amino acids;and CsCesA1 was 3198 bp, encoded a protein of 1065 amino acids.The two genes showed the similarity of 86%in nucleotides and 93%in protein, and the secondary structure was quite similar.The results of this investigation provided a significant foundation for further research on CesA genes of fi-ber crops.