科研信息化技术与应用
科研信息化技術與應用
과연신식화기술여응용
E-science Technology & Application
2013年
3期
76-82
,共7页
辛天怡%姚辉%韩建萍%宋经元
辛天怡%姚輝%韓建萍%宋經元
신천이%요휘%한건평%송경원
当归%ITS2条形码%鉴定
噹歸%ITS2條形碼%鑒定
당귀%ITS2조형마%감정
Angelicae sinensis Radix%ITS2 barcode%identiifcation
为了确保该药材的质量及临床安全用药,需要对常用中药当归及其混伪品进行分子鉴定。本文介绍了利用 ITS2条形码进行鉴定的方法:对 ITS2序列进行 PCR 扩增,并将纯化后的 PCR 产物进行双向测序,运用CodonCode Aligner拼接后,基于HMMer注释方法去掉两端的5.8S区和28S区获得ITS2条形码,用MEGA5.0软件进行相关数据分析,构建NJ树。结果表明:当归与其混伪品ITS2条形码间存在明显差异,基于ITS2条形码构建的NJ树能够将当归及其混伪品区分开。因此, ITS2条形码可有效地鉴别中药当归及其混伪品,为保证其临床用药安全提供了新的技术手段。
為瞭確保該藥材的質量及臨床安全用藥,需要對常用中藥噹歸及其混偽品進行分子鑒定。本文介紹瞭利用 ITS2條形碼進行鑒定的方法:對 ITS2序列進行 PCR 擴增,併將純化後的 PCR 產物進行雙嚮測序,運用CodonCode Aligner拼接後,基于HMMer註釋方法去掉兩耑的5.8S區和28S區穫得ITS2條形碼,用MEGA5.0軟件進行相關數據分析,構建NJ樹。結果錶明:噹歸與其混偽品ITS2條形碼間存在明顯差異,基于ITS2條形碼構建的NJ樹能夠將噹歸及其混偽品區分開。因此, ITS2條形碼可有效地鑒彆中藥噹歸及其混偽品,為保證其臨床用藥安全提供瞭新的技術手段。
위료학보해약재적질량급림상안전용약,수요대상용중약당귀급기혼위품진행분자감정。본문개소료이용 ITS2조형마진행감정적방법:대 ITS2서렬진행 PCR 확증,병장순화후적 PCR 산물진행쌍향측서,운용CodonCode Aligner병접후,기우HMMer주석방법거도량단적5.8S구화28S구획득ITS2조형마,용MEGA5.0연건진행상관수거분석,구건NJ수。결과표명:당귀여기혼위품ITS2조형마간존재명현차이,기우ITS2조형마구건적NJ수능구장당귀급기혼위품구분개。인차, ITS2조형마가유효지감별중약당귀급기혼위품,위보증기림상용약안전제공료신적기술수단。
In this paper, a method using ITS2 barcode to identify Angelicae sinensis Radix and its adulterants is introduced. Firstly, the PCR technique was performed to get the ITS2 barcodes and puriifed PCR products were sequenced bi-directionally. Then sequence assembly and consensus sequence generation were performed using the CodonCode Aligner. To remove the 5.8S and 28S region, the hidden Markov model (HMM)-based annotation methods were used. Finally, the ITS2 barcodes were aligned with Clustal-W and the genetic distances were computed by MEGA 5.0 according to the Kimura-2-Parameter (K2P) model. The Neighbor-joining (NJ) phylogenetic tree was constructed. The results showed that there is obvious genetic divergence in the ITS2 sequences between Angelicae sinensis Radix and its adulterants. NJ tree based on ITS2 barcodes can distinguish Angelicae sinensis Radix and its adulterants. This concludes that ITS2 region as a DNA barcode can effectively provided a new technique for identiifcation of Angelicae sinensis Radix.