高等学校化学学报
高等學校化學學報
고등학교화학학보
CHEMICAL JOURNAL OF CHINESE UNIVERSITIES
2015年
1期
110-115
,共6页
何佳%冯喜增%邵学广%蔡文生
何佳%馮喜增%邵學廣%蔡文生
하가%풍희증%소학엄%채문생
疏水蛋白%云母%分子动力学模拟%自由能计算%吸附构象%自适应偏置力方法
疏水蛋白%雲母%分子動力學模擬%自由能計算%吸附構象%自適應偏置力方法
소수단백%운모%분자동역학모의%자유능계산%흡부구상%자괄응편치력방법
Hydrophobin protein%Mica%Molecular dynamics simulation%Free-energy calculation%Adsorbed structure%Adaptive biasing force method
采用分子动力学模拟方法研究了疏水蛋白( HFBI)在亲水云母表面的吸附过程。通过6组平行的分子动力学模拟得到了2种不同的稳定吸附结构,即通过N端和通过亲水的α螺旋与表面吸附,得到了5种吸附残基。进一步用自适应偏置力方法计算了所有吸附残基与表面的结合自由能。结果表明,残基Lys是吸附过程的关键残基,即当HFBI通过含有Lys残基的α螺旋与云母表面作用时,其吸附构象最稳定。静电作用是吸附过程的主要驱动力。在该吸附结构中, HFBI的疏水面暴露在溶液中,有效降低了云母表面的润湿性。
採用分子動力學模擬方法研究瞭疏水蛋白( HFBI)在親水雲母錶麵的吸附過程。通過6組平行的分子動力學模擬得到瞭2種不同的穩定吸附結構,即通過N耑和通過親水的α螺鏇與錶麵吸附,得到瞭5種吸附殘基。進一步用自適應偏置力方法計算瞭所有吸附殘基與錶麵的結閤自由能。結果錶明,殘基Lys是吸附過程的關鍵殘基,即噹HFBI通過含有Lys殘基的α螺鏇與雲母錶麵作用時,其吸附構象最穩定。靜電作用是吸附過程的主要驅動力。在該吸附結構中, HFBI的疏水麵暴露在溶液中,有效降低瞭雲母錶麵的潤濕性。
채용분자동역학모의방법연구료소수단백( HFBI)재친수운모표면적흡부과정。통과6조평행적분자동역학모의득도료2충불동적은정흡부결구,즉통과N단화통과친수적α라선여표면흡부,득도료5충흡부잔기。진일보용자괄응편치력방법계산료소유흡부잔기여표면적결합자유능。결과표명,잔기Lys시흡부과정적관건잔기,즉당HFBI통과함유Lys잔기적α라선여운모표면작용시,기흡부구상최은정。정전작용시흡부과정적주요구동력。재해흡부결구중, HFBI적소수면폭로재용액중,유효강저료운모표면적윤습성。
Atomistic molecular dynamics( MD) simulations were conducted to elucidate the adsorption beha- vior of hydrophobin protein( HFBI) on the hydrophilic mica surface. Six independent simulations starting from three representative initial orientations of HFBI toward the surface were performed. The adsorbed patches are clustered into two classes, namely theα-helix and the N-terminal part. The main secon-dary structures of pro- tein were preserved in the entire course of adsorption due to four disulfide bonds. Furthermore, binding free energies of five different adsorbed residues were calculated employing the adaptive biasing force method. The results showed that Lys was the key residue for the adsorption. It can be deduced that the adsorption of HFBI via the α-helix part consisting of Gln36, Asn37, Lys50, and Thr51 is most energetically favored. Electrostatic interactions constitute the main driving forces responsible for the adsorption of HFBI on the mica surface. In the most stable adsorbed structure, the hydrophobic patch was exposed in the aqueous media, leading to the reduction of the wettability of mica.