CAJ | 학술논문

对本实验室和其他学者已经发表的马氏珠母贝外套膜和珍珠囊的454焦磷酸测序转录组数据以及NCBI中的EST数据进行了重组装、同源序列比对和GO注释分析。重组装获得了30266个contig，平均长度522 bp，其中最长的contig为4144 bp；NR数据库BLAST分析获取了2310个相似性contig (E≤10-5)，其中1902个在模式动物(人、小鼠、海胆、线虫、斑马鱼、果蝇或者太平洋牡蛎和珠母贝)中可以查找到同源序列。基因注释(GO)结果表明，注释到生物学过程的3846个contig可分为23个亚类，其中代谢过程蛋白、细胞过程蛋白和生物学调控蛋白为contig数量最多的3个亚类；注释到分子功能的4601个contig共分为11个亚类，其中结合蛋白的contig数量最多，其次是具有催化活性的蛋白和结构分子活性蛋白；注释到细胞成分的2992个contig分为17个亚类，其中细胞和细胞组成部分的contig数量最多，其次分别是细胞器和大分子复合体contig数量。本研究结果有助于开展外套膜和珍珠囊特异性表达基因的大规模筛选。
대본실험실화기타학자이경발표적마씨주모패외투막화진주낭적454초린산측서전록조수거이급NCBI중적EST수거진행료중조장、동원서렬비대화GO주석분석。중조장획득료30266개contig，평균장도522 bp，기중최장적contig위4144 bp；NR수거고BLAST분석획취료2310개상사성contig (E≤10-5)，기중1902개재모식동물(인、소서、해담、선충、반마어、과승혹자태평양모려화주모패)중가이사조도동원서렬。기인주석(GO)결과표명，주석도생물학과정적3846개contig가분위23개아류，기중대사과정단백、세포과정단백화생물학조공단백위contig수량최다적3개아류；주석도분자공능적4601개contig공분위11개아류，기중결합단백적contig수량최다，기차시구유최화활성적단백화결구분자활성단백；주석도세포성분적2992개contig분위17개아류，기중세포화세포조성부분적contig수량최다，기차분별시세포기화대분자복합체contig수량。본연구결과유조우개전외투막화진주낭특이성표체기인적대규모사선。
The pearl oyster, Pinctada fucata martensii, was an ideal animal for studies of biomineralization. The mantle and pearl sac were the two important tissues involved in biomineralization of the shell and pearls. In this study we reassembled the transcriptome data of 454 pyrosequencing of the mantle and pearl sac. The sources of the data included studies in our own laboratory, reports from other researchers, and ESTs from NCBI. We conducted BLAST and Gene Ontology analysis, and analyzed the contig reassembling with CLC Genomics Workbench 5. The reassembling generated 30266 contigs with an average length of 522 bp, and the largest length of 4144 bp. The Blast analysis against non-redundant (NR) database revealed 2310 contigs with the E-values smaller than 10-5, among which 1902 contigs had homologous sequences in at least one of the following model animals of Homo sapiens, Mus musculus, Strongylocentrotus purpuratus, Caenorhabditis elegans, Danio rerio, Drosophila melanogaster, or Crassostrea gigas and Pinctada. The GO annotation showed that 3846 contigs could be characterized into 23 subcategories of biological processes, of which the top three subcategories with most contigs were metabolic process, cellular process and biological regulation;4601 contigs could be characterized into 11 subcategories of molecular functions, of which the top three with most contigs were binding, catalytic activity, and structural molecular activity; 2992 contigs could be characterized into 17 subcategories of cellular components, of which the top three were cell part, organelle, and macromolecular complex. These results suggested that there were a great number of transcriptome contigs of P. fucata martensii. Our study will be helpful in the large-scale screening of specially-expressed genes in the mantle and pearl sac of P. fucata martensii.