遗传
遺傳
유전
HEREDITAS(BEIJING)
2015年
1期
91-97
,共7页
晁江涛%孔英珍%王倩%孙玉合%龚达平%吕婧%刘贯山
晁江濤%孔英珍%王倩%孫玉閤%龔達平%呂婧%劉貫山
조강도%공영진%왕천%손옥합%공체평%려청%류관산
物理图谱%基因分布图%SVG矢量图%作图%生物软件
物理圖譜%基因分佈圖%SVG矢量圖%作圖%生物軟件
물리도보%기인분포도%SVG시량도%작도%생물연건
physical map%gene distribution map%SVG vector graph%draw map%bio-software
遗传图谱表现形式简洁明了,为分析遗传规律、克隆基因提供了便利。Gbrowse、MapViewer等工具虽然能够协助研究人员绘制相似形式的物理图谱,但有很大的局限性:(1)数据需提前布置好;(2)输出结果无法灵活修改。鉴于此,文章基于 Perl和 SVG语言,开发了一款生物辅助作图软件 MapGene2Chrom的本地版与网页版,该软件能够依据输入数据快速绘制相应的物理图谱。该软件输入数据格式简单,输出结果易于修改,图片格式为SVG矢量图,具有很好的移植性,以期为研究人员绘制物理图谱提供便利。
遺傳圖譜錶現形式簡潔明瞭,為分析遺傳規律、剋隆基因提供瞭便利。Gbrowse、MapViewer等工具雖然能夠協助研究人員繪製相似形式的物理圖譜,但有很大的跼限性:(1)數據需提前佈置好;(2)輸齣結果無法靈活脩改。鑒于此,文章基于 Perl和 SVG語言,開髮瞭一款生物輔助作圖軟件 MapGene2Chrom的本地版與網頁版,該軟件能夠依據輸入數據快速繪製相應的物理圖譜。該軟件輸入數據格式簡單,輸齣結果易于脩改,圖片格式為SVG矢量圖,具有很好的移植性,以期為研究人員繪製物理圖譜提供便利。
유전도보표현형식간길명료,위분석유전규률、극륭기인제공료편리。Gbrowse、MapViewer등공구수연능구협조연구인원회제상사형식적물리도보,단유흔대적국한성:(1)수거수제전포치호;(2)수출결과무법령활수개。감우차,문장기우 Perl화 SVG어언,개발료일관생물보조작도연건 MapGene2Chrom적본지판여망혈판,해연건능구의거수입수거쾌속회제상응적물리도보。해연건수입수거격식간단,수출결과역우수개,도편격식위SVG시량도,구유흔호적이식성,이기위연구인원회제물리도보제공편리。
Genetic linkage map is helpful for analysis on heredity of some gene families and map-based gene cloning because of its simple and elegant manifestation. One software is in need to draw a gene physical map, which shows a manner similar to the genetic linkage map, based on the relative physical distance between genes. Although some tools like GBrowse and MapViewer etc. are available to draw gene physical map, there are obvious limitations for them: (1) the data need to be decorated in advance; (2) users can’t modify results. Therefore, we de-veloped a bio-assisted mapping software——MapGene2Chrom with PC and web versions, which is based on Perl and SVG languages. The software can be used to draw the corresponding physical map quickly in SVG format based on the input data. It will become a useful tool for drawing gene physical map with the advantages of simple input data format, easily modified output and very good portability.