南京林业大学学报(自然科学版)
南京林業大學學報(自然科學版)
남경임업대학학보(자연과학판)
JOURNAL OF NANJING FORESTRY UNIVERSITY(NATURAL SCIENCE EDITION)
2015年
3期
34-38
,共5页
马秋月%廖卓毅%张得芳%戴晓港%陈赢男%李淑娴
馬鞦月%廖卓毅%張得芳%戴曉港%陳贏男%李淑嫻
마추월%료탁의%장득방%대효항%진영남%리숙한
碧桃%微卫星%SSR%转录组%高通量测序
碧桃%微衛星%SSR%轉錄組%高通量測序
벽도%미위성%SSR%전록조%고통량측서
Prunus persica cv. duplex%microsatellites%SSR%transcriptome%high-throughput sequencing
为开发碧桃转录组微卫星信息,利用454高通量测序技术,对其花瓣转录组序列进行SSR位点发掘,结果发现含SSR的序列4705条,共得到5668个SSR,平均每3.49 kb出现1个SSR。微卫星序列主要以三碱基重复为主,约占总数的42.66%。笔者共发现516种碱基重复基元,所占比例最高的为(AG/CT)n(18?34%),其次是( AAG/CTT) n(12?42%)。微卫星多为重复长度小于20 bp 的短序列,长度大于20 bp 的微卫星仅占总数的12?13%。研究还发现碧桃花瓣微卫星的频率和长度呈显著负相关( P<0?05),相关系数为-0?246。
為開髮碧桃轉錄組微衛星信息,利用454高通量測序技術,對其花瓣轉錄組序列進行SSR位點髮掘,結果髮現含SSR的序列4705條,共得到5668箇SSR,平均每3.49 kb齣現1箇SSR。微衛星序列主要以三堿基重複為主,約佔總數的42.66%。筆者共髮現516種堿基重複基元,所佔比例最高的為(AG/CT)n(18?34%),其次是( AAG/CTT) n(12?42%)。微衛星多為重複長度小于20 bp 的短序列,長度大于20 bp 的微衛星僅佔總數的12?13%。研究還髮現碧桃花瓣微衛星的頻率和長度呈顯著負相關( P<0?05),相關繫數為-0?246。
위개발벽도전록조미위성신식,이용454고통량측서기술,대기화판전록조서렬진행SSR위점발굴,결과발현함SSR적서렬4705조,공득도5668개SSR,평균매3.49 kb출현1개SSR。미위성서렬주요이삼감기중복위주,약점총수적42.66%。필자공발현516충감기중복기원,소점비례최고적위(AG/CT)n(18?34%),기차시( AAG/CTT) n(12?42%)。미위성다위중복장도소우20 bp 적단서렬,장도대우20 bp 적미위성부점총수적12?13%。연구환발현벽도화판미위성적빈솔화장도정현저부상관( P<0?05),상관계수위-0?246。
To obtain information of Prunus persica cv. duplex, the transcriptome of peach flowers were sequenced by 454 high?throughput sequencing technology. A total of 5 668 SSRs were identified in 4 705 sequences, with an average densi?ty of one SSR per 3.49 kb. Tri?nucleotide repeats were the most abundant, accounted for 42.66% of all SSRs. Among all the 516 SSR motifs, ( AG/CT ) n was the most frequent repeat motif ( 18?34%) , followed by the ( AAG/CTT ) n ( 12?42%) . The microsatellites in length below 20 bp were in maximum proportion, while the microsatellites over 20 bp were only 12.13%. There were significant negative correlation ( P<0.05) between the frequency of microsatellites and the length, the correlation coefficient was -0.246.