现代检验医学杂志
現代檢驗醫學雜誌
현대검험의학잡지
Journal of Modern Laboratory Medicine
2015年
4期
6-9,13
,共5页
谢小娟%朱娜%潘晶晶%魏力强%陈葳
謝小娟%硃娜%潘晶晶%魏力彊%陳葳
사소연%주나%반정정%위력강%진위
膀胱癌%miRNA-148a%生物信息学
膀胱癌%miRNA-148a%生物信息學
방광암%miRNA-148a%생물신식학
bladder carcinoma%miRNA-148a%bioinformatics
目的:探索 miRNA-148a 在膀胱癌发生发展中的作用。方法收集35例膀胱癌组织和16例非癌组织,采用荧光定量 PCR 方法检测 miRNA-148a 的相对表达量,并分析其与临床特征的相关性;采用生物信息学分析,预测 miRNA-148a的靶基因和转录因子,构建 TF-miRNA-148a-靶基因调控网络图,并对其靶基因进行 GO 富集和 KEGG Pathway 分析。结果miRNA-148a 在膀胱癌中的相对表达量(0.0008±0.0002)明显低于非癌组织(0.0021±0.0005)(t=2.46,P <0.05),其相对表达量在不同性别、年龄、病理分级、临床分期、淋巴结转移组的差异无统计学意义(P >0.05)。3个软件都预测到的 miRNA-148a 靶基因268个;预测到 miRNA-148a 的转录因子60个,结合评分>80的结合位点657个;对268个靶基因进行 GO 富集分析,发现其靶基因主要涉及神经细胞分化、发育、增殖、mRNA 合成,蛋白连接等众多的生物学过程(P <0.001,相对于背景具有统计意义);KEGG Pathway 分析发现268个靶基因参与 p53,恶性肿瘤、前列腺癌、PI3K-AKT 等信号通路(P <0.05,相对于背景具有统计意义);根据构建的 TF-miRNA-148a-靶基因调控网络图,挖掘出可能调控 miRNA-148a 的转录因子有 SP1,ESR1,AP1,MYC,BRCA1等;可能受 miRNA-148a 调控的基因有 IGF1,P27 kip1,NCOA1,PTEN, SERPINE1等。结论miRNA-148a 在膀胱癌中表达下调,可能参与膀胱癌的发生发展,生物信息学分析为后续研究提供一定的思路。
目的:探索 miRNA-148a 在膀胱癌髮生髮展中的作用。方法收集35例膀胱癌組織和16例非癌組織,採用熒光定量 PCR 方法檢測 miRNA-148a 的相對錶達量,併分析其與臨床特徵的相關性;採用生物信息學分析,預測 miRNA-148a的靶基因和轉錄因子,構建 TF-miRNA-148a-靶基因調控網絡圖,併對其靶基因進行 GO 富集和 KEGG Pathway 分析。結果miRNA-148a 在膀胱癌中的相對錶達量(0.0008±0.0002)明顯低于非癌組織(0.0021±0.0005)(t=2.46,P <0.05),其相對錶達量在不同性彆、年齡、病理分級、臨床分期、淋巴結轉移組的差異無統計學意義(P >0.05)。3箇軟件都預測到的 miRNA-148a 靶基因268箇;預測到 miRNA-148a 的轉錄因子60箇,結閤評分>80的結閤位點657箇;對268箇靶基因進行 GO 富集分析,髮現其靶基因主要涉及神經細胞分化、髮育、增殖、mRNA 閤成,蛋白連接等衆多的生物學過程(P <0.001,相對于揹景具有統計意義);KEGG Pathway 分析髮現268箇靶基因參與 p53,噁性腫瘤、前列腺癌、PI3K-AKT 等信號通路(P <0.05,相對于揹景具有統計意義);根據構建的 TF-miRNA-148a-靶基因調控網絡圖,挖掘齣可能調控 miRNA-148a 的轉錄因子有 SP1,ESR1,AP1,MYC,BRCA1等;可能受 miRNA-148a 調控的基因有 IGF1,P27 kip1,NCOA1,PTEN, SERPINE1等。結論miRNA-148a 在膀胱癌中錶達下調,可能參與膀胱癌的髮生髮展,生物信息學分析為後續研究提供一定的思路。
목적:탐색 miRNA-148a 재방광암발생발전중적작용。방법수집35례방광암조직화16례비암조직,채용형광정량 PCR 방법검측 miRNA-148a 적상대표체량,병분석기여림상특정적상관성;채용생물신식학분석,예측 miRNA-148a적파기인화전록인자,구건 TF-miRNA-148a-파기인조공망락도,병대기파기인진행 GO 부집화 KEGG Pathway 분석。결과miRNA-148a 재방광암중적상대표체량(0.0008±0.0002)명현저우비암조직(0.0021±0.0005)(t=2.46,P <0.05),기상대표체량재불동성별、년령、병리분급、림상분기、림파결전이조적차이무통계학의의(P >0.05)。3개연건도예측도적 miRNA-148a 파기인268개;예측도 miRNA-148a 적전록인자60개,결합평분>80적결합위점657개;대268개파기인진행 GO 부집분석,발현기파기인주요섭급신경세포분화、발육、증식、mRNA 합성,단백련접등음다적생물학과정(P <0.001,상대우배경구유통계의의);KEGG Pathway 분석발현268개파기인삼여 p53,악성종류、전렬선암、PI3K-AKT 등신호통로(P <0.05,상대우배경구유통계의의);근거구건적 TF-miRNA-148a-파기인조공망락도,알굴출가능조공 miRNA-148a 적전록인자유 SP1,ESR1,AP1,MYC,BRCA1등;가능수 miRNA-148a 조공적기인유 IGF1,P27 kip1,NCOA1,PTEN, SERPINE1등。결론miRNA-148a 재방광암중표체하조,가능삼여방광암적발생발전,생물신식학분석위후속연구제공일정적사로。
Objective To explore the role of miRNA-148a in bladder tumorous development and progression.Methods Ex-pression of miRNA-148a was assessed in 35 bladder carcinoma tissues and 16 non-carcinoma tissues by fluorescence quanti-tative real time PCR,and correlation with clinical features was evaluated.Target genes and transcription factors of miRNA-148a were predicted using bioinformatic analysis,then TF-miRNA-148a-target genes network diagram was built and the tar-get genes was analyzed of gene ontology enrichment and KEGG pathway.Results Expression of miRNA-148a was lower in bladder carcinoma tissues than in non-carcinoma tissues(0.000 8±0.000 2 vs 0.002 1±0.000 5)(t=2.46,P <0.05),but its expression was no statistical significance in different groups of gender,age,pathological classification,clinical stage, lymph node metastasis (P >0.05).268 target genes of miRNA-148a were predicted by three softwares at the same time,60 transcription factors were predicted and the binding sites with combination scroes above 80 was 657.The target genes of miRNA-148a was enriched in many biological processes,such as neuron differentiation,generation of neurons,neuron projec-tion development,cytoplasmic mRNA processing body,cytoplasm(P <0.001).They also participated in p53 signaling path-way,proteoglycans in cancer-homo sapiens,pathways in cancer,prostate cancer,protein processing in endoplasmic reticulum, focal adhesion and so on(P <0.05).According to TF-miRNA-148a-target genes network diagram,miRNA-148a was regula-ted by SP1,ESR1,AP1,MYC and BRCA1,genes of IGF1,P27kip1 ,NCOA1,PTEN,SERPINE1 might be regulated by miR-NA-148a.Conclusion miRNA-148a which was significantly down-regulation in bladder carcinoma tissues may be participate in bladder tumorous development and progression,bioinformatics analysis provides some ideas for further research.